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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10512087_10514060_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10512087 - 10514060
Intron Length:
1974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAGCTCTTAATT
Flanking Amino Acid:
EGYCDLVNGTDGASFPPFVK
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.1
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.7
0.74
0.8
77.2
35.5
Minor 5ss
36
-1.6
3.2
47
48.3
Minor BPS
66.3
0.59
1.2
72.71
38.2

Associated Gene:

Gene:
CD36
Ensembl Gene ID:
ENSAPLG00000004563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004725
10506032 - 10540154
34123