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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10514654_10514795_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10514654 - 10514795
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTACTTCTAACT
Flanking Amino Acid:
LDPVLGVFYPYNGTYDGLYR
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
31.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.5
0.6
1
69.5
40.5
Minor 5ss
32.5
-2
3.2
40.8
45.4
Minor BPS
54
0.2
1.7
71.65
38.8

Associated Gene:

Gene:
CD36
Ensembl Gene ID:
ENSAPLG00000004563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004725
10506032 - 10540154
34123