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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10514976_10517135_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10514976 - 10517135
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
ATTGCTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGCTAAACA
Flanking Amino Acid:
TITCLNLAVVAAPALYTNAF
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.7
37.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.2
0.5
0.9
66.2
40.1
Minor 5ss
42.1
-0.9
2.8
55.1
43.5
Minor BPS
60.4
0.32
2.1
76.04
41.3

Associated Gene:

Gene:
CD36
Ensembl Gene ID:
ENSAPLG00000004563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004725
10506032 - 10540154
34123