About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105216830_105219100_F

Intron Information:

Intron Rank:
125790
Intron Class:
major
Intron Phase:
Intron Coordinates:
105216830 - 105219100
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
GTAAATTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
64
0.32
1
57.9
38.3
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
44.4
-0.4
1.7
51.97
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043082
105216552 - 105219844
3293