About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105318312_105318817_R

Intron Information:

Intron Rank:
146856
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
105318312 - 105318817
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATGTGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATTGTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
58
0.18
1.3
59.4
45.1
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
56.5
0.18
2
66.56
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026326
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045736
105317559 - 105319010
1452