Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105331813_105332938_F

Intron Information:

Intron Rank:

135054

Intron Class:

major

Intron Phase:

Intron Coordinates:

105331813 - 105332938

Intron Length:

1126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGGATC

5'SS Class:

major

3'SS Sequence:

CTCTTCTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TATATTTTGATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

68.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

87.6

0.85

0.7

80.1

Minor 5ss

35.9

-1.6

3.5

51.8

45.2

Minor BPS

59.8

0.29

1.2

66.15

33.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022656

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020973

105330406 - 105348981

18576