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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105485444_105513427_R

Intron Information:

Intron Rank:
146790
Intron Class:
major
Intron Phase:
Intron Coordinates:
105485444 - 105513427
Intron Length:
27984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGGAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CTTCAATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
72
0.5
1
66.9
42.9
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
60.3
0.4
1.8
80.09
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026292
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036175
105485296 - 105529919
44624