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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105487869_105489652_F

Intron Information:

Intron Rank:
147116
Intron Class:
major
Intron Phase:
Intron Coordinates:
105487869 - 105489652
Intron Length:
1784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAGAG
5'SS Class:
major
3'SS Sequence:
TTTTAACTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCATTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
64.9
35
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70.5
0.46
1
66.6
39.5
Minor 5ss
26
-2.8
3.2
29.5
37.1
Minor BPS
67.4
0.63
1.3
76.69
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046531
105487771 - 105498281
10511