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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105524851_105525717_R

Intron Information:

Intron Rank:
145523
Intron Class:
major
Intron Phase:
Intron Coordinates:
105524851 - 105525717
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
TACTATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.4
0.5
0.9
69.7
41
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
60.6
0.33
1.6
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032782
105524723 - 105526220
1498