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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105525759_105526184_R

Intron Information:

Intron Rank:
145524
Intron Class:
major
Intron Phase:
Intron Coordinates:
105525759 - 105526184
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032782
105524723 - 105526220
1498