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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105593926_105595054_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105593926 - 105595054
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTT
Flanking Amino Acid:
KVAREIFQHNKYKMETIEQK
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.5
0.53
1
74.2
40.2
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
63.5
0.5
1.6
78.46
39

Associated Gene:

Gene:
MRPL39
Ensembl Gene ID:
ENSAPLG00000010041
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010470
105590477 - 105599904
9428