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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105596536_105598253_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105596536 - 105598253
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATATAA
5'SS Class:
major
3'SS Sequence:
TTTGGAATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTTTTTGGAATT
Flanking Amino Acid:
VNLVKAPEVPVISGAFCYDV
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
71.9
28.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
75.7
0.58
1
71.2
43.2
Minor 5ss
31.9
-2.1
3
38.4
46.6
Minor BPS
48.4
-0
2.1
71.39
40.7

Associated Gene:

Gene:
MRPL39
Ensembl Gene ID:
ENSAPLG00000010041
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010470
105590477 - 105599904
9428