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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105598354_105598835_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105598354 - 105598835
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTTTGTAATT
Flanking Amino Acid:
KDEDPEEVNKAYWRSCAMIM
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
80
0.75
1
78.6
31
Major PPT
82.3
0.73
0.7
77.1
31
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
59.2
0.37
2
79.54
37.3

Associated Gene:

Gene:
MRPL39
Ensembl Gene ID:
ENSAPLG00000010041
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010470
105590477 - 105599904
9428