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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105598976_105599356_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105598976 - 105599356
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TCACTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTCACTT
Flanking Amino Acid:
ALSTPYNCAMHLSEWHCKKS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.5
38.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.7
0.74
0.8
80.7
31
Minor 5ss
32.9
-1.9
3.2
35.5
41.5
Minor BPS
50.8
0.1
1.8
71.95
39.8

Associated Gene:

Gene:
MRPL39
Ensembl Gene ID:
ENSAPLG00000010041
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010470
105590477 - 105599904
9428