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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105599564_105599732_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
105599564 - 105599732
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGCCCCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTTTATGTAATT
Flanking Amino Acid:
DRARGGRARPGFVSTPAASR
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.3
44.1
45.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.8
0.76
0.8
78.3
34.9
Minor 5ss
38.8
-1.3
3.3
48.1
47.6
Minor BPS
52
0.14
2.2
76.08
41.4

Associated Gene:

Gene:
MRPL39
Ensembl Gene ID:
ENSAPLG00000010041
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010470
105590477 - 105599904
9428