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Intron Name: Anas_platyrhynchos_platyrhynchos_1_105607037_105627116_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105607037 - 105627116

Intron Length:

20080

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTCGC

5'SS Class:

major

3'SS Sequence:

TGTTCCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTTAT

U12 Branch Point Sequence:

TATTGCTGAATT

Flanking Amino Acid:

LLLGSLGVLCCRKATGISIE

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.52

1.1

60.4

44.5

Major BPS

72.5

0.56

1.1

63.4

Major PPT

83.8

0.76

0.8

77.6

31.1

Minor 5ss

37.5

-1.4

54.6

42.5

Minor BPS

63.2

0.49

1.9

82.19

39.2

Associated Gene:

Gene:

JAM2

Ensembl Gene ID:

ENSAPLG00000022073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039160

105606595 - 105637189

30595

ENSAPLT00000046714

105606595 - 105637189

30595