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Intron Name: Anas_platyrhynchos_platyrhynchos_1_105627018_105627116_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

105627018 - 105627116

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGGAAA

5'SS Class:

major

3'SS Sequence:

TGTTCCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTTAT

U12 Branch Point Sequence:

TATTGCTGAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

67.8

38.8

Major BPS

72.5

0.56

1.1

63.4

Major PPT

83.8

0.76

0.8

77.6

31.1

Minor 5ss

33.6

-1.9

3.2

40.3

45.6

Minor BPS

63.2

0.49

1.9

82.19

39.2

Associated Gene:

Gene:

JAM2

Ensembl Gene ID:

ENSAPLG00000022073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018543

105626906 - 105637189

10284