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Intron Name: Anas_platyrhynchos_platyrhynchos_1_105627183_105629832_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

105627183 - 105629832

Intron Length:

2650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAC

U12 Branch Point Sequence:

CCAAACTGACAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

75.8

36.3

Major BPS

64.8

0.37

0.9

55.1

32.8

Major PPT

92.2

0.95

0.6

88.1

21.7

Minor 5ss

37.3

-1.4

3.6

55.1

49.1

Minor BPS

36.5

-1.1

1.8

32.14

39.8

Associated Gene:

Gene:

JAM2

Ensembl Gene ID:

ENSAPLG00000022073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018543

105626906 - 105637189

10284