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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105627183_105631093_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105627183 - 105631093
Intron Length:
3911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTTGTTCATT
Flanking Amino Acid:
NKNVKAEEFKEAILSCKHKF
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.8
36.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.9
0.58
0.8
74.2
31
Minor 5ss
37.3
-1.4
3.6
55.1
49.1
Minor BPS
49
0.01
2.4
75.64
41.8

Associated Gene:

Gene:
JAM2
Ensembl Gene ID:
ENSAPLG00000022073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046714
105606595 - 105637189
30595
ENSAPLT00000039160
105606595 - 105637189
30595