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Intron Name: Anas_platyrhynchos_platyrhynchos_1_105631208_105632481_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105631208 - 105632481

Intron Length:

1274

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTATAA

U12 Branch Point Sequence:

TCTCTTTTAAAG

Flanking Amino Acid:

SFVYYNGDFTGDLKDRAEML

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

76.9

33.7

Major BPS

57.5

0.19

1.1

55.2

40.4

Major PPT

0.68

81.7

27.6

Minor 5ss

31.3

-2.1

38.6

46.4

Minor BPS

58.8

0.14

1.5

61.29

40.8

Associated Gene:

Gene:

JAM2

Ensembl Gene ID:

ENSAPLG00000022073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018543

105626906 - 105637189

10284

ENSAPLT00000039160

105606595 - 105637189

30595