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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105631208_105634577_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105631208 - 105634577
Intron Length:
3370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GATTGTTTAACA
Flanking Amino Acid:
SFVYYNGDFTVPPTTPVCEV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.5
0.87
0.7
80.8
36.5
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
65.3
0.48
1.8
73.2
38.6

Associated Gene:

Gene:
JAM2
Ensembl Gene ID:
ENSAPLG00000022073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046714
105606595 - 105637189
30595