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Intron Name: Anas_platyrhynchos_platyrhynchos_1_105632635_105634577_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105632635 - 105634577

Intron Length:

1943

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGAAAGA

5'SS Class:

major

3'SS Sequence:

TTTCATTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

GATTGTTTAACA

Flanking Amino Acid:

GEATITLTVLVPPTTPVCEV

Intron Amino Acid Position:

163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.4

0.29

1.1

55.9

43.2

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

88.5

0.87

0.7

80.8

36.5

Minor 5ss

30.4

-2.2

3.2

31.1

42.6

Minor BPS

65.3

0.48

1.8

73.2

38.6

Associated Gene:

Gene:

JAM2

Ensembl Gene ID:

ENSAPLG00000022073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039160

105606595 - 105637189

30595

ENSAPLT00000018543

105626906 - 105637189

10284