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Intron Name: Anas_platyrhynchos_platyrhynchos_1_105647019_105648968_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

105647019 - 105648968

Intron Length:

1950

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGTCAGTG

5'SS Class:

weak_major

3'SS Sequence:

TTTCTGTTCATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAA

U12 Branch Point Sequence:

TTTCTGTTCATA

Flanking Amino Acid:

RARGAGQGQRLCFQDVLAMT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.4

0.13

1.2

49.5

41.5

Major BPS

75.5

0.63

40.9

Major PPT

80.3

0.68

0.8

32.6

Minor 5ss

39.8

-1.1

3.4

46.5

48.8

Minor BPS

47.2

-0.2

2.4

67.76

39.4

Associated Gene:

Gene:

GABPA

Ensembl Gene ID:

ENSAPLG00000009339

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009767

105646761 - 105668608

21848