Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105648788_105648968_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

105648788 - 105648968

Intron Length:

181

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGTCA

5'SS Class:

major

3'SS Sequence:

TTTCTGTTCATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAA

U12 Branch Point Sequence:

TTTCTGTTCATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

63.8

36.5

Major BPS

75.5

0.63

40.9

Major PPT

80.3

0.68

0.8

32.6

Minor 5ss

43.2

-0.7

47.2

Minor BPS

47.2

-0.2

2.4

67.76

39.4

Associated Gene:

Gene:

GABPA

Ensembl Gene ID:

ENSAPLG00000009339

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022921

105648747 - 105682866

34120