Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105661538_105662545_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105661538 - 105662545

Intron Length:

1008

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

TTCTGCTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TTCTGCTTTACA

Flanking Amino Acid:

GEIATVTIDQPVQIIPASVQ

Intron Amino Acid Position:

363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.56

1.3

81.8

38.5

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

85.6

0.8

79.6

32.5

Minor 5ss

42.6

-0.8

2.9

41.5

Minor BPS

60.1

0.31

2.1

75.21

42.3

Associated Gene:

Gene:

GABPA

Ensembl Gene ID:

ENSAPLG00000009339

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040375

105645775 - 105668608

22834

ENSAPLT00000022921

105648747 - 105682866

34120

ENSAPLT00000009767

105646761 - 105668608

21848