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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105732151_105749634_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105732151 - 105749634
Intron Length:
17484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGCGAT
5'SS Class:
major
3'SS Sequence:
CATTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAAACAATT
Flanking Amino Acid:
AVAEEIQDEVDELLQKEQNY
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
65.3
40.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
82.1
0.72
0.9
76.6
37.2
Minor 5ss
44.6
-0.6
3.3
64.2
47.3
Minor BPS
43.8
-0.3
2.1
69.68
40.5

Associated Gene:

Gene:
APP
Ensembl Gene ID:
ENSAPLG00000008913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009295
105703206 - 105879124
175919
ENSAPLT00000039466
105703206 - 105879124
175919
ENSAPLT00000009304
105703206 - 105879124
175919