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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105749735_105751814_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105749735 - 105751814
Intron Length:
2080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCCC
5'SS Class:
major
3'SS Sequence:
TTTATTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCCTCCTTAAAA
Flanking Amino Acid:
PKKAAQIRSQVMTHLRVIYE
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
62.6
42.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
39.2
-1.2
3
52.3
44.4
Minor BPS
74.8
0.78
1.4
76.43
40.8

Associated Gene:

Gene:
APP
Ensembl Gene ID:
ENSAPLG00000008913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039466
105703206 - 105879124
175919
ENSAPLT00000009304
105703206 - 105879124
175919
ENSAPLT00000009295
105703206 - 105879124
175919