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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105751944_105763476_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105751944 - 105763476
Intron Length:
11533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTCTTCCCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTAAACTGAACT
Flanking Amino Acid:
ITALQTVPPRPRHVFNMLKK
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
36.4
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
77.7
0.62
0.7
73.3
25.2
Minor 5ss
34.2
-1.8
3.1
38.1
40.6
Minor BPS
54.8
0.23
1.7
72.08
43.9

Associated Gene:

Gene:
APP
Ensembl Gene ID:
ENSAPLG00000008913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039466
105703206 - 105879124
175919
ENSAPLT00000009304
105703206 - 105879124
175919
ENSAPLT00000009295
105703206 - 105879124
175919