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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105764831_105772534_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105764831 - 105772534
Intron Length:
7704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AAAATTTGAAAG
Flanking Amino Acid:
EAKHRERMSQVMREWEEAER
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
79.6
0.67
0.9
81.2
36.5
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
44.5
-0.5
1.5
42.81
35.2

Associated Gene:

Gene:
APP
Ensembl Gene ID:
ENSAPLG00000008913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039466
105703206 - 105879124
175919
ENSAPLT00000009304
105703206 - 105879124
175919
ENSAPLT00000009295
105703206 - 105879124
175919