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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105772669_105800006_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105772669 - 105800006
Intron Length:
27338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
AACTTCACCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TCTCTCAAAACT
Flanking Amino Acid:
TTESVEEVVRVPTTAASTPD
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
67.6
0.4
0.9
63.6
37.1
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
50.3
0.09
2
73.75
43

Associated Gene:

Gene:
APP
Ensembl Gene ID:
ENSAPLG00000008913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009295
105703206 - 105879124
175919