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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105800213_105817306_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105800213 - 105817306
Intron Length:
17094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
GGADADYADGSDDKVVEEQP
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.4
0.73
0.8
82.3
28.5
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
APP
Ensembl Gene ID:
ENSAPLG00000008913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039466
105703206 - 105879124
175919
ENSAPLT00000009304
105703206 - 105879124
175919
ENSAPLT00000009295
105703206 - 105879124
175919