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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10588137_10596336_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10588137 - 10596336
Intron Length:
8200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAGA
5'SS Class:
major
3'SS Sequence:
TCCCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATCTTCTGAATA
Flanking Amino Acid:
EARTVKLLLLGAGESGKSTI
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.3
40.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.8
0.71
0.7
76.4
25.7
Minor 5ss
34
-1.8
2.7
33.7
41.6
Minor BPS
64.4
0.45
1.4
70.02
36.5

Associated Gene:

Gene:
GNAT3
Ensembl Gene ID:
ENSAPLG00000004836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034325
10587660 - 10615262
27603