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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105943203_105957751_R

Intron Information:

Intron Rank:
142832
Intron Class:
major
Intron Phase:
Intron Coordinates:
105943203 - 105957751
Intron Length:
14549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAGT
5'SS Class:
major
3'SS Sequence:
CACTTAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATCACTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
77.2
37.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
65.6
0.35
0.9
56.1
38.7
Minor 5ss
45.3
-0.5
2.6
59.8
39
Minor BPS
71
0.74
1.5
82.96
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024152
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043528
105942829 - 105957982
15154