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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_105943203_105966083_R

Intron Information:

Intron Rank:
142830
Intron Class:
major
Intron Phase:
Intron Coordinates:
105943203 - 105966083
Intron Length:
22881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CACTTAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATCACTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
65.6
0.35
0.9
56.1
38.7
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
71
0.74
1.5
82.96
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024152
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030891
105942296 - 105967070
24775