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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10596380_10600517_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10596380 - 10600517
Intron Length:
4138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
SGKSTIVKQMKIIHKDGFTY
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.4
0.53
1
67.2
43.5
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
GNAT3
Ensembl Gene ID:
ENSAPLG00000004836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034325
10587660 - 10615262
27603
ENSAPLT00000005024
10579496 - 10615262
35767