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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106057791_106101605_F

Intron Information:

Intron Rank:
143623
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
106057791 - 106101605
Intron Length:
43815

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
TAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
AAATGATTTCCGG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCCTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
38.9
-0.6
3.2
47.9
48.2
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
60.5
0.41
1.4
68.86
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027392
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034874
106056922 - 106105036
48115