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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106068748_106069667_R

Intron Information:

Intron Rank:
135911
Intron Class:
major
Intron Phase:
Intron Coordinates:
106068748 - 106069667
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATCTGTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.1
0.5
1.1
68.5
41.9
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
59.3
0.29
2
74.73
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027883
106068674 - 106072308
3635