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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106069818_106116499_R

Intron Information:

Intron Rank:
135914
Intron Class:
major
Intron Phase:
Intron Coordinates:
106069818 - 106116499
Intron Length:
46682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCTTTGTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
74.2
0.55
1
69.1
41.8
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
55.6
0.17
2
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044191
106069348 - 106116652
47305