Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10608815_10613144_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10608815 - 10613144

Intron Length:

4330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTGCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTTCTGCAAAG

Flanking Amino Acid:

TQFSFKDLNFRMFDVGGQRS

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.7

33.7

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

71.9

0.49

1.1

74.6

34.1

Minor 5ss

32.8

-2

2.9

39.4

46.1

Minor BPS

-0.2

2.3

64.71

43.2

Associated Gene:

Gene:

GNAT3

Ensembl Gene ID:

ENSAPLG00000004836

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034325

10587660 - 10615262

27603

ENSAPLT00000005024

10579496 - 10615262

35767