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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106104463_106104631_F

Intron Information:

Intron Rank:
143625
Intron Class:
major
Intron Phase:
Intron Coordinates:
106104463 - 106104631
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATCC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTGAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
64.6
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
83.8
0.76
0.9
86.3
25.1
Minor 5ss
44.6
-0.6
2.9
60.2
44.5
Minor BPS
64.4
0.31
1.5
70.73
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027392
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040151
106104183 - 106105036
854