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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106116605_106122881_R

Intron Information:

Intron Rank:
135915
Intron Class:
major
Intron Phase:
Intron Coordinates:
106116605 - 106122881
Intron Length:
6277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCTGCTAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
72.4
0.51
0.8
65.1
36.3
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
42.8
-0.4
2.6
71.79
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046713
106116583 - 106122986
6404