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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10613275_10613480_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10613275 - 10613480
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCATCAAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATCAAAA
Flanking Amino Acid:
DMVLVEDKEVNRMHESLQLF
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
57.9
0.18
1.1
52.1
40.6
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
50.7
0.02
2
70.5
41.2

Associated Gene:

Gene:
GNAT3
Ensembl Gene ID:
ENSAPLG00000004836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034325
10587660 - 10615262
27603
ENSAPLT00000005024
10579496 - 10615262
35767