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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106147127_106147499_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106147127 - 106147499
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
TTCTCTTGGACA
Flanking Amino Acid:
KKVSGTLVRAKPGYHDVVTI
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
73.9
29.7
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
73.6
0.53
1
71.7
38.2
Minor 5ss
29.2
-2.4
3.1
32.8
35.7
Minor BPS
65.8
0.49
1.5
74.83
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009041
106146385 - 106225227
78843