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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106185505_106188930_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106185505 - 106188930
Intron Length:
3426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGATC
5'SS Class:
major
3'SS Sequence:
CCCCCTCATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
CCCCCCTCATTC
Flanking Amino Acid:
TKVMGTFTKKSKGYTDIVKI
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71.4
38.2
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
71.8
0.49
0.8
68.8
30.5
Minor 5ss
43
-0.8
3.1
60.3
44.4
Minor BPS
44.7
-0.4
1.8
47.35
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008991
106184648 - 106225706
41059