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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106189107_106189968_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106189107 - 106189968
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTAATTTTAACT
Flanking Amino Acid:
TGYYVVFSQKVTDGTECRPY
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.7
0.44
1
62.8
43.1
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
68.5
0.66
1.3
78.03
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008991
106184648 - 106225706
41059