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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106190729_106192334_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106190729 - 106192334
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CTATATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ACACCCTTACCT
Flanking Amino Acid:
VDKTKKKYYSASSHGNWGSW
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
76.4
0.59
1
73
41.6
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
61.1
0.43
1.7
72.84
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008991
106184648 - 106225706
41059