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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106192619_106198100_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106192619 - 106198100
Intron Length:
5482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATGAGTAATA
Flanking Amino Acid:
TITEFFDDGHGNCLLDQPRK
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
80
0.75
1
78.6
31
Major PPT
77.4
0.62
0.8
74.5
35.7
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
43.2
-0.5
2.4
58.47
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008991
106184648 - 106225706
41059