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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106198269_106213061_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
106198269 - 106213061
Intron Length:
14793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATATATTT
Flanking Amino Acid:
HAAFTVAHEIGHLLGLSHDD
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.2
39
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.3
0.79
0.8
80
32
Minor 5ss
43.7
-0.7
2.6
56.9
42.5
Minor BPS
49.8
0.07
2
77.67
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009041
106146385 - 106225227
78843
ENSAPLT00000008991
106184648 - 106225706
41059