About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106262054_106262836_R

Intron Information:

Intron Rank:
130613
Intron Class:
major
Intron Phase:
Intron Coordinates:
106262054 - 106262836
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GTTTGCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
68
0.45
1
57.8
39
Major PPT
83.3
0.75
0.9
76.3
37.8
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
61.2
0.35
2.1
76.35
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017512
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020746
106261741 - 106263698
1958