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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_106303084_106304022_F

Intron Information:

Intron Rank:
140608
Intron Class:
major
Intron Phase:
Intron Coordinates:
106303084 - 106304022
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATCGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
63.4
0.3
1.1
59.2
41.4
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
50.4
0.09
1.8
70.72
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025708
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025777
106302832 - 106323826
20995